WeightedCluster

Clustering of Weighted Data

v2.0 · Dec 10, 2025 · GPL (>= 2)

Description

Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions, sequence analysis typology validation using parametric bootstraps and plotting (fuzzy) clusters of state sequences. It further provides a fuzzy and crisp CLARA algorithm to cluster large database with sequence analysis, and a methodological framework for Robustness Assessment of Regressions using Cluster Analysis Typologies (RARCAT).

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CRAN Check Status

1 ERROR

2 WARNING

2 NOTE

9 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	420.6s
r-devel-linux-x86_64-debian-gcc	NOTE	298.8s
r-devel-linux-x86_64-fedora-clang	OK	756s
r-devel-linux-x86_64-fedora-gcc	OK	846.5s
r-devel-macos-arm64	ERROR	211s
r-devel-windows-x86_64	OK	844s
r-oldrel-macos-arm64	WARNING	254s
r-oldrel-macos-x86_64	OK	831s
r-oldrel-windows-x86_64	OK	1142s
r-patched-linux-x86_64	OK	414.1s
r-release-linux-x86_64	OK	413.6s
r-release-macos-arm64	WARNING	244s
r-release-macos-x86_64	OK	1189s
r-release-windows-x86_64	OK	830s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

ERROR r-devel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown

Quitting from FuzzySA.Rmd:112-121 [dreg]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `summary.DirichletRegModel()`:
! 
Optimization did not converge in 247 + 2 iterations and exited with code 8
---
Backtrace:
    ▆
 1. ├─base::summary(bdirig)
 2. └─DirichletReg::summary.DirichletRegModel(bdirig)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FuzzySA.Rmd' failed with diagnostics:

Optimization did not converge in 247 + 2 iterations and exited with code 8
--- failed re-building ‘FuzzySA.Rmd’

--- re-building ‘RARCAT.Rmd’ using rmarkdown
--- finished re-building ‘RARCAT.Rmd’

--- re-building ‘WeightedCluster.Rnw’ using knitr
--- finished re-building ‘WeightedCluster.Rnw’

--- re-building ‘WeightedClusterFR.Rnw’ using knitr
--- finished re-building ‘WeightedClusterFR.Rnw’

--- re-building ‘WeightedClusterPreview.Rnw’ using knitr
--- finished re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘FuzzySA.Rmd’

Error: Vignette re-building failed.
Execution halted

OK r-devel-windows-x86_64

WARNING r-oldrel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown
--- finished re-building ‘FuzzySA.Rmd’

--- re-building ‘RARCAT.Rmd’ using rmarkdown
--- finished re-building ‘RARCAT.Rmd’

--- re-building ‘WeightedCluster.Rnw’ using knitr
2025-12-10 22:26:41.109 R[46130:372237] XType: Using static font registry.
--- finished re-building ‘WeightedCluster.Rnw’

--- re-building ‘WeightedClusterFR.Rnw’ using knitr
2025-12-10 22:26:55.145 R[58581:395409] XType: Using static font registry.
--- finished re-building ‘WeightedClusterFR.Rnw’

--- re-building ‘WeightedClusterPreview.Rnw’ using knitr
Error: processing vignette 'WeightedClusterPreview.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'WeightedClusterPreview.tex' failed.
LaTeX errors:
! LaTeX Error: File `textpos.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.85 \usepackage
                {tikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted

OK r-oldrel-macos-x86_64

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

WARNING r-release-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown
--- finished re-building ‘FuzzySA.Rmd’

--- re-building ‘RARCAT.Rmd’ using rmarkdown
--- finished re-building ‘RARCAT.Rmd’

--- re-building ‘WeightedCluster.Rnw’ using knitr
2025-12-10 22:36:21.938 R[36700:819318] XType: Using static font registry.
--- finished re-building ‘WeightedCluster.Rnw’

--- re-building ‘WeightedClusterFR.Rnw’ using knitr
2025-12-10 22:36:34.553 R[39232:824797] XType: Using static font registry.
--- finished re-building ‘WeightedClusterFR.Rnw’

--- re-building ‘WeightedClusterPreview.Rnw’ using knitr
Error: processing vignette 'WeightedClusterPreview.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'WeightedClusterPreview.tex' failed.
LaTeX errors:
! LaTeX Error: File `textpos.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.85 \usepackage
                {tikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

ERROR 9 OK · 2 NOTE · 2 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part

ERROR r-devel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown

Quitting from FuzzySA.Rmd:112-121 [dreg]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

WARNING r-release-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown
--- finished re-building ‘FuzzySA.Rmd’

--- re-building ‘RARCAT.Rmd’ using rmarkdown
--- finished re-building ‘RA

WARNING r-oldrel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown
--- finished re-building ‘FuzzySA.Rmd’

--- re-building ‘RARCAT.Rmd’ using rmarkdown
--- finished re-building ‘RA

Reverse Dependencies (6)

depends

ClusterStability

imports

MEDseq dTBM

suggests

SuperCell TraMineR seqhandbook

Dependency Network

Version History

new 2.0 Mar 9, 2026

Maintainer

Matthias Studer

Dependencies

Depends

R (>= 3.0.0) TraMineR (>= 2.0-6) cluster

Imports

utils RColorBrewer foreach progressr future doFuture nnet fastcluster vegclust lme4 margins

Suggests

RUnit knitr isotone vegan lattice rmarkdown Cairo progress DirichletReg betareg fpc

Compilation

Needs compilation

First Published

Mar 9, 2026

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