This package was removed from CRAN on 2022-09-04. Its history is shown below.

Reason: issues were not corrected in time

VariantScan

1.1.9

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

1 releasesCRAN page ↗

Install

R (CRAN)Ubuntu (r2u)

install.packages("VariantScan", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-variantscan

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.01

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

Yes

README

Dependencies · direct

Downloads

VariantScan Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on68 r2u

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

Rd 387 (43%)R 382 (42%)Vignettes 131 (15%)

Code characteristics

Object systems

S36

Cyclomatic complexity: 1.0 median / 13 max
Documented parameters: 100%
System requirements: 1 external

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

10 2 exported

Complexity

2.7 avg / 13 max

Call network

10 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (0)

Author records are not tracked yet for this package.

Package Timeline

1 release. R releases are shown for context.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-09-04
issues were not corrected in time
1.1.9
2022-06-30
R
R 4.2.0 released · 2022-04-22

Package metadata

Total releases: 1
Minimum R: ≥ 3.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet