TDbook

0.0.6

Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees" by Guangchuang Yu (2022, ISBN:9781032233574)

0packages depend

10.1Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Guangchuang YuFirst published 2021-10-284 releasesCRAN page ↗GitHub ↗

The companion package that provides all the datasets used in the book "Data Integration, Manipulation and Visualization of Phylogenetic Trees" by Guangchuang Yu (2022, ISBN:9781032233574).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("TDbook", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("YuLab-SMU/TDbook")

Development version from YuLab-SMU/TDbook. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tdbook

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-TDbook

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-TDbook

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 56 s · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

None

Vignettes

README

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

10.1K

CRAN downloads in the past year

Rank #4,326 · ~28/day · ~838/mo

Releases R versions

Daily download trend is not available in this view yet.

71530 days

2.3K90 days

10.1K1 year

Compare downloads with other packages →

Also on170 r2u26 autocran

Repository

GitHub ↗ yulab-smu/tdbook

13Stars

3Forks

0Open issues

0Open PRs

0Releases

42Commits

42 commits · 0% stars, 30d

Stars over time

2023-04-08 · 132026-07-07 · 13

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

Rd 697 (54%)R 582 (46%)

Call graph

Open call graph →

Code intelligence has not been computed for this package yet.

People & History

People (3)

Maintainer (1)

Guangchuang Yu

Author, Maintainer, Copyright holder

Authors (3)

Guangchuang Yu

Author, Maintainer, Copyright holder

Lin Li

Author

Shuangbin Xu

Author

Guangchuang Yu

Author, Maintainer, Copyright holder

Release timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.0.6Latest
2022-08-13 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
0.0.5
2022-03-03 · diff ↗
0.0.4
2021-11-03 · diff ↗
0.0.3
2021-10-28
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-10-28
Total releases: 4 / 5 yrs
License: Artistic-2.0 OSI
Minimum R: ≥ 3.5
Bundled data: 122 KB / 28 files
Download size: 3.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet