TDCor
Gene Network Inference from Time-Series Transcriptomic Data
Description
The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.
Downloads
230
Last 30 days
21053rd
530
Last 90 days
1.9K
Last year
Trend: +81.1% (30d vs prior 30d)
0
Last 30 days
24
Last 90 days
93
Last year
Trend: -100% (30d vs prior 30d)
3
Last 7 days
12
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.
Code
Code metrics have not been computed for this package yet.