SurvivalClusteringTree

1.1.3

Clustering Analysis Using Survival Tree and Forest Algorithms

0packages depend

2.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Lu YouFirst published 2023-09-114 releasesCRAN page ↗

An outcome-guided algorithm is developed to identify clusters of samples with similar characteristics and survival rate. The algorithm first builds a random forest and then defines distances between samples based on the fitted random forest. Given the distances, we can apply hierarchical clustering algorithms to define clusters. Details about this method is described in https://github.com/luyouepiusf/SurvivalClusteringTree.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SurvivalClusteringTree", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-survivalclusteringtree

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SurvivalClusteringTree

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SurvivalClusteringTree

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.3 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 64%
Documented parameters: 99%
Return-value docs: 100%
References docs: 0%

Downloads

2.3K

CRAN downloads in the past year

Rank #18,849 · ~6/day · ~189/mo

Releases R versions

Daily download trend is not available in this view yet.

18630 days

60090 days

2.3K1 year

Compare downloads with other packages →

Also on475 r2u26 autocran

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (5)

Rcppsurvivaldplyrgridformula.tools

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

knitr rmarkdown tinytest miceRanger

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (9)

Maintainer (1)

Lu You

Author, Maintainer

Authors (5)

Author, Maintainer

Author

Author

Author

Author

Contributors (4)

Contributor

Contributor

Contributor

Contributor

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.3Latest
2026-02-25 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1.1
2024-05-24 · diff ↗
1.1
2024-05-13 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0
2023-09-11
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-09-11
Total releases: 4 / 3 yrs
License: GPL (>= 2) OSI
Download size: 175 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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