R Observatory: Metrics for SuperExactTest version 1.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SuperExactTest

1.2.0

Exact Test and Visualization of Multi-Set Intersections

0packages depend

5.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Minghui WangFirst published 2015-11-0910 releasesCRAN page ↗GitHub ↗

Identification of sets of objects with shared features is a common operation in all disciplines. Analysis of intersections among multiple sets is fundamental for in-depth understanding of their complex relationships. This package implements a theoretical framework for efficient computation of statistical distributions of multi-set intersections based upon combinatorial theory, and provides multiple scalable techniques for visualizing the intersection statistics. The statistical algorithm behind this package was published in Wang et al. (2015) doi:10.1038/srep16923.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SuperExactTest", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mw201608/SuperExactTest")

Development version from mw201608/SuperExactTest. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-superexacttest

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SuperExactTest

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SuperExactTest

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.7 min · r-release-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-19
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 30%
Documented parameters: 75%
Return-value docs: 100%
References docs: 71%

Downloads

5.1K

CRAN downloads in the past year

Rank #9,797 · ~14/day · ~429/mo

Releases R versions

Daily download trend is not available in this view yet.

36130 days

1K90 days

5.1K1 year

Compare downloads with other packages →

Also on395 r2u8 autocran296 conda_forge

Repository

GitHub ↗ mw201608/superexacttest

30Stars

5Forks

0Open issues

0Open PRs

4Releases

85Commits

3Contributors

setintersectionstatisticsvisualization

85 commits · Last activity 2026-07-16 · 0% stars, 30d

Stars over time

2025-02-08 · 272026-07-07 · 30

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/mw201608/superexacttest on 2026-08-03.

Governance and community (1)

Funding

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.1.0gridmethods

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Minghui Wang

Author, Maintainer

Authors (3)

Minghui Wang

Author, Maintainer

Bin Zhang

Author

Yongzhong Zhao

Author

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

1.2.0Latest
2026-07-14 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.1.0
2022-03-23 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.7
2019-06-21 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.6
2019-02-26 · diff ↗
1.0.4
2018-10-26 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.0.0
2018-02-07 · diff ↗
0.99.4
2017-06-15 · diff ↗

Show 6 earlier events

0.99.3
2017-05-06 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
0.99.2
2015-11-10 · diff ↗
0.99.1
2015-11-09
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-11-09
Total releases: 10 / 11 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.1.0
Bundled data: 29 KB / 3 files
Download size: 86 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SuperExactTest")

Format

Wang, M., Zhang, B., & Zhao, Y. (2026). SuperExactTest: Exact Test and Visualization of Multi-Set Intersections (Version 1.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.SuperExactTest

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SuperExactTest version 1.2.0 [Data set]. HJJB, LLC. Data release v2026-08-08. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-08, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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