SepTest

0.0.1

Tests for First-Order Separability in Spatio-Temporal Point Processes

0packages depend

1.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Mohammad GhorbaniFirst published 2026-02-031 releasesCRAN page ↗GitHub ↗

Provides statistical tools for testing first-order separability in spatio-temporal point processes, that is, assessing whether the spatio-temporal intensity function can be expressed as the product of spatial and temporal components. The package implements several hypothesis tests, including exact and asymptotic methods for Poisson and non-Poisson processes. Methods include global envelope tests, chi-squared type statistics, and a novel Hilbert-Schmidt independence criterion (HSIC) test, all with both block and pure permutation procedures. Simulation studies and real world examples, including the 2001 UK foot and mouth disease outbreak data, illustrate the utility of the proposed methods. The package contains all simulation studies and applications presented in Ghorbani et al. (2021) doi:10.1016/j.csda.2021.107245 and Ghorbani et al. (2025) doi:10.1007/s11749-025-00972-y.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SepTest", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mghorbani01/SepTest")

Development version from mghorbani01/SepTest. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-septest

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SepTest

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SepTest

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.0 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: 94%
Return-value docs: 100%
References docs: 73%

Downloads

1.1K

CRAN downloads in the past year

Rank #22,385 · ~3/day · ~94/mo

Releases R versions

Daily download trend is not available in this view yet.

17830 days

52990 days

1.1K1 year

Compare downloads with other packages →

Also on32 r2u22 autocran

Repository

GitHub ↗ mghorbani01/septest

1Stars

0Forks

0Open issues

0Open PRs

0Releases

10Commits

1Contributors

10 commits · Last activity 2025-12-26 · 0% stars, 30d

Stars over time

2026-02-03 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/mghorbani01/septest on 2026-07-19.

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (15)

combinat dHSIC fields GET ggplot2graphicsMASSpatchwork reshape2 scatterplot3d spatstat.explore spatstat.geom spatstat.model splancsstats

LinkingTo (0)

none

Suggests (8)

testthat rmarkdown pkgdown knitr spatstat stpp RColorBrewer plot3D

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,502 (63%)Rd 2,075 (37%)

Code characteristics

Cyclomatic complexity: 21.0 median / 37 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

26 26 exported

Complexity

19.1 avg / 37 max

Call network

26 nodes / 15 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (2)

Maintainer (1)

Mohammad Ghorbani

Author, Maintainer

Authors (2)

Mohammad Ghorbani

Author, Maintainer

Nafiseh Vafaei

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.0.1Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-02-03
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Download size: 62 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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