SemiCompRisks
Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data
Description
Hierarchical multistate models are considered to perform the analysis of independent/clustered semi-competing risks data. The package allows to choose the specification for model components from a range of options giving users substantial flexibility, including: accelerated failure time or proportional hazards regression models; parametric or non-parametric specifications for baseline survival functions and cluster-specific random effects distribution; a Markov or semi-Markov specification for terminal event following non-terminal event. While estimation is mainly performed within the Bayesian paradigm, the package also provides the maximum likelihood estimation approach for several parametric models. The package also includes functions for univariate survival analysis as complementary analysis tools.
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Last 90 days
4.3K
Last year
Trend: +52.4% (30d vs prior 30d)
25
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394
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Trend: -39% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | WARNING |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (3 non-OK)
CRAN incoming feasibility
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Kyu", "Ha"),
family = "Lee",
role = c("aut", "cre"),
email = "klee15239@gmail.com"),
person(given = "Catherine",
family = "Lee",
role = "aut"),
person(given = "Danilo",
family = "Alvares",
role = "aut"),
person(given = "Sebastien",
family = "Haneuse",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Kyu", "Ha"),
family = "Lee",
role = c("aut", "cre"),
email = "klee15239@gmail.com"),
person(given = "Catherine",
family = "Lee",
role = "aut"),
person(given = "Danilo",
family = "Alvares",
role = "aut"),
person(given = "Sebastien",
family = "Haneuse",
role = "aut"))
as necessary.
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building ‘SemiCompRisks.ltx’ using tex Error: processing vignette 'SemiCompRisks.ltx' failed with diagnostics: Running 'texi2dvi' on 'SemiCompRisks.ltx' failed. LaTeX errors: !pdfTeX error: pdflatex (file bbm8): Font bbm8 at 600 not found ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘SemiCompRisks.ltx’ SUMMARY: processing the following file failed: ‘SemiCompRisks.ltx’ Error: Vignette re-building failed. Execution halted
Check History
WARNING 9 OK · 3 NOTE · 2 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Kyu", "Ha"),
family = "Lee",
role = c("aut", "cre"),
...[truncated]...
person(given = "Danilo",
family = "Alvares",
role = "aut"),
person(given = "Sebastien",
family = "Haneuse",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Kyu", "Ha"),
family = "Lee",
role = c("aut", "cre"),
...[truncated]...
person(given = "Danilo",
family = "Alvares",
role = "aut"),
person(given = "Sebastien",
family = "Haneuse",
role = "aut"))
as necessary.
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building ‘SemiCompRisks.ltx’ using tex Error: processing vignette 'SemiCompRisks.ltx' failed with diagnostics: Running 'texi2dvi' on 'SemiCompRisks.ltx' failed. LaTeX errors: !pdfTeX error: pdflatex (file bbm ...[truncated]... Font bbm8 at 600 not found ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘SemiCompRisks.ltx’ SUMMARY: processing the following file failed: ‘SemiCompRisks.ltx’ Error: Vignette re-building failed. Execution halted
installed package size
installed size is 6.8Mb
sub-directories of 1Mb or more:
libs 5.8Mb
installed package size
installed size is 8.0Mb
sub-directories of 1Mb or more:
libs 7.0Mb
Code & tests
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
92,876
Files
114
Compiled share
81.8%
Has compiled src
Yes
Language breakdown
API
Exported functions
16
Internal functions
27
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
91.7%
\dontrun example ratio
41.2%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2013-12-21
Latest release
2021-02-03
Avg cadence
143 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.