SEset

1.0.1

Computing Statistically-Equivalent Path Models

0packages depend

2.7Kdownloads / year

–test coverage

9/13checks pass

Overview

About

Maintained by Oisín RyanFirst published 2022-03-171 releasesCRAN page ↗GitHub ↗

Tools to compute and analyze the set of statistically-equivalent (Gaussian, linear) path models which generate the input precision or (partial) correlation matrix. This procedure is useful for understanding how statistical network models such as the Gaussian Graphical Model (GGM) perform as causal discovery tools. The statistical-equivalence set of a given GGM expresses the uncertainty we have about the sign, size and direction of directed relationships based on the weights matrix of the GGM alone. The derivation of the equivalence set and its use for understanding GGMs as causal discovery tools is described by Ryan, O., Bringmann, L.F., & Schuurman, N.K. (2022) <doi: 10.31234/osf.io/ryg69>.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SEset", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ryanoisin/SEset")

Development version from ryanoisin/SEset. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-seset

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SEset

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SEset

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

4NOTE9OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64

Slowest check: 1.2 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-06-09
9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
9 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
6 OK · 8 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 658 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 75%

Downloads

2.7K

CRAN downloads in the past year

Rank #16,014 · ~7/day · ~224/mo

Releases R versions

Daily download trend is not available in this view yet.

19330 days

71090 days

2.7K1 year

Compare downloads with other packages →

Also on88 r2u26 autocran

Repository

GitHub ↗ ryanoisin/seset

2Stars

1Forks

1Open issues

0Open PRs

0Releases

37Commits

2Contributors

License GPL-3.0 · 37 commits · Last activity 2023-01-19

Stars over time

2024-05-06 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/ryanoisin/seset on 2026-07-19.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

combinatMatrixRdpackstats

LinkingTo (0)

none

Suggests (1)

qgraph

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 593 (55%)Rd 487 (45%)

Code characteristics

Cyclomatic complexity: 5.0 median / 8 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

11 11 exported

Complexity

4.1 avg / 8 max

Call network

11 nodes / 7 edges

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Oisín Ryan

no longer listed · 1.0.1

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.1Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2022-03-17
Total releases: 1 / 4 yrs
License: GPL-3 OSI
Bundled data: 0.3 KB / 1 file
Download size: 77 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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