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SEMgraph

Network Analysis and Causal Inference Through Structural Equation Modeling

v1.2.4 · Dec 17, 2025 · GPL-3

Description

Estimate networks and causal relationships in complex systems through Structural Equation Modeling. This package also includes functions for importing, weight, manipulate, and fit biological network models within the Structural Equation Modeling framework as outlined in the Supplementary Material of Grassi M, Palluzzi F, Tarantino B (2022) <doi:10.1093/bioinformatics/btac567>.

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CRAN Check Status

3 ERROR
11 OK
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r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 ERROR
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 ERROR
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available: 'graphite', 'AnnotationDbi'

Package suggested but not available for checking: ‘org.Hs.eg.db’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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ERROR r-oldrel-macos-arm64

package dependencies

Package required but not available: ‘graphite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-oldrel-macos-x86_64

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OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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ERROR r-release-macos-arm64

package dependencies

Package required but not available: ‘graphite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-release-macos-x86_64

*


            
OK r-release-windows-x86_64

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Check History

ERROR 11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 9, 2026
ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available: 'graphite', 'AnnotationDbi'

Package suggested but not available for checking: ‘org.Hs.eg.db’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-release-macos-arm64

package dependencies

Package required but not available: ‘graphite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-oldrel-macos-arm64

package dependencies

Package required but not available: ‘graphite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

Reverse Dependencies (1)

depends

Dependency Network

Dependencies Reverse dependencies igraph lavaan aspect boot corpcor dagitty flip gdata ggm glasso glmnet graph mgcv mvtnorm pbapply +5 more dependencies SEMdeep SEMgraph

Version History

new 1.2.4 Mar 9, 2026