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SCEM

Splitting-Coalescence-Estimation Method

v1.2.0 · Jul 2, 2026 · GPL-3

Description

We introduce improved methods for statistically assessing birth seasonality and intra-annual variation. The first method we propose is a new idea that uses a nonparametric clustering procedure to group individuals with similar time series data and estimate birth seasonality based on the clusters. One can use the function SCEM() to implement this method. The second method estimates input parameters for use with a previously-developed parametric approach (Tornero et al., 2013). The relevant code for this approach is makeFits_OLS(), while makeFits_initial() is the code to implement the same method but with given initial conditions for two parameters. The latter can be used to show the disadvantage of the existing approach. One can use the function makeFits() to generate parametric birth seasonality estimates using either initialization. Detailed description can be found here: Chazin Hannah, Soudeep Deb, Joshua Falk, and Arun Srinivasan (2019) <doi:10.1111/arcm.12432> "New Statistical Approaches to Intra-Individual Isotopic Analysis and Modeling Birth Seasonality in Studies of Herd Animals".

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7

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24249th

8

Last 90 days

11

Last year

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r2u CRAN

0

Last 30 days

16

Last 90 days

84

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

5

Last 7 days

16

Last 30 days

1

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

9 OK
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r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 6 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jul 3, 2026

Code

Structure

Lines of code

1,488

Files

44

Compiled share

0%

Has compiled src

No

Language breakdown

R 804 (54%)Tests 7 (0.5%)Docs 558 (37.5%)Vignettes 119 (8%)

API

Exported functions

14

Internal functions

0

Recent export changes

v1.0.0+14 EBIC, EstTrend, SCEM +11 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.01

testthat edition

3

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

20%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

3

First release

2021-08-06

Latest release

2026-07-02

Avg cadence

896 days

Cold removal rate

Dep drift

1

LOC over versions

v1.0.0: 1,486 LOCv1.1.0: 1,486 LOCv1.2.0: 1,488 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies mathjaxr SCEM

Version History

1 tracked
new 1.2.0 Jul 2, 2026