Rpdb

2.4.5

Read, Write, Visualize and Manipulate PDB Files

0packages depend

6.7Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Leonard MadaFirst published 2014-02-259 releasesCRAN page ↗GitHub ↗

Provides tools to read, write, visualize Protein Data Bank (PDB) files and perform some structural manipulations.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("Rpdb", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("discoleo/Rpdb")

Development version from discoleo/Rpdb. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rpdb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-Rpdb

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-Rpdb

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.9 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 71 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 98%
Documented parameters: 86%
Return-value docs: 100%
References docs: 9%

Downloads

6.7K

CRAN downloads in the past year

Rank #6,937 · ~18/day · ~557/mo

Releases R versions

Daily download trend is not available in this view yet.

25630 days

1.4K90 days

6.7K1 year

Compare downloads with other packages →

Also on133 r2u2 autocran

Repository

GitHub ↗ discoleo/rpdb

0Stars

0Forks

3Open issues

0Open PRs

0Releases

License GPL-3.0 · Last activity 2026-05-02

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/discoleo/rpdb on 2026-07-30.

Continuous integration (1)

GitHub Actions

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (2)

rglstats

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Leonard Mada

Maintainer, Contributor · added in 2.3.4

Authors (1)

Julien Idé

Author

Contributors (1)

Leonard Mada

Maintainer, Contributor · added in 2.3.4

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

2.4.5Latest
2026-05-12 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
2.4.4
2026-03-30 · diff ↗
2.4.3
2026-03-16 · diff ↗
2.4.1
2025-09-15 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.3.4
2023-09-28 · diff ↗
unarchivedReturned to CRAN
2023-09-28
R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2023-03-02
issues were not corrected in time
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23

Show 9 earlier events

2.3
2017-09-25 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
2.2
2014-04-26 · diff ↗
R
R 3.1.0 released · 2014-04-10
2.1
2014-03-26 · diff ↗
2.0
2014-02-25
R
R 3.0.0 released · 2013-04-03

Package metadata

First published: 2014-02-25
Total releases: 9 / 12 yrs
License: GPL (>= 3) OSI
Bundled data: 6.2 KB / 2 files
Download size: 93 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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