This package was removed from CRAN on 2026-03-21. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 0.0.1, its last release before removal.

RepertoiR

0.0.1

Repertoire Graphical Visualization

0packages depend

1.6Kdownloads / year

–test coverage

–checks pass

Overview

About

Maintained by Ido Hasson1 releasesCRAN page ↗GitHub ↗

Visualization platform for T cell receptor repertoire analysis output results. It includes comparison of sequence frequency among samples, network of similar sequences and convergent recombination source between species. Currently repertoire analysis is in early stage of development and requires new approaches for repertoire data examination and assessment as we intend to develop. No publication is available yet (will be available in the near future), Efroni (2021) <https:>.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/RepertoiR/RepertoiR_0.0.1.tar.gz"
pkgFile <- "RepertoiR_0.0.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.0.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("systemsbiomed/RepertoiR")

Development version from systemsbiomed/RepertoiR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-repertoir

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RepertoiR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.14

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 99 wordsVignettesNopkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.6K

CRAN downloads in the past year

Rank #24,501 · ~4/day · ~135/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

090 days

1.6K1 year

Compare downloads with other packages →

Also on88 r2u19 autocran

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (7)

circlizegrDevicesigraph reshape2 stringdist stringi stringr

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 374 (60%)Rd 245 (39%)Other 6 (1%)

Code characteristics

Object systems

S33

Cyclomatic complexity: 1.0 median / 2 max
Test cases: 3 / 0.14 per code line

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

6 3 exported

Complexity

1.3 avg / 2 max

Call network

6 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (4)

Maintainer (1)

Ido Hasson

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-03-21
issues were not corrected despite reminders
0.0.1
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

Total releases: 1
License: MIT + file LICENSE OSI
Download size: 250 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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