R Observatory: Metrics for RaJIVE version 1.0

Balamuta, James Joseph

RaJIVE

1.0

Robust Angle Based Joint and Individual Variation Explained

0packages depend

2.5Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Erica PonziFirst published 2021-02-041 releasesCRAN page ↗

A robust alternative to the aJIVE (angle based Joint and Individual Variation Explained) method (Feng et al 2018: doi:10.1016/j.jmva.2018.03.008) for the estimation of joint and individual components in the presence of outliers in multi-source data. It decomposes the multi-source data into joint, individual and residual (noise) contributions. The decomposition is robust to outliers and noise in the data. The method is illustrated in Ponzi et al (2021) arXiv:2101.09110.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("RaJIVE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rajive

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-RaJIVE

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RaJIVE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.6 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

3

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 186 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 13%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.5K

CRAN downloads in the past year

Rank #18,549 · ~7/day · ~206/mo

Releases R versions

Daily download trend is not available in this view yet.

14930 days

57890 days

2.5K1 year

Compare downloads with other packages →

Also on97 r2u6 autocran

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.0

Imports (3)

ggplot2 doParallel foreach

LinkingTo (0)

none

Suggests (6)

knitr rmarkdown testthat cowplot reshape2 dplyr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Erica Ponzi

Author, Maintainer

Authors (2)

Erica Ponzi

Author, Maintainer

Abhik Ghosh

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2021-02-04
Total releases: 1 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.1.0
Download size: 156 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Start here. This is the citation for the package itself.

citation("RaJIVE")

CRAN DOI

https://doi.org/10.32614/CRAN.package.RaJIVE

BibTeX, derived from DESCRIPTION

@Manual{RaJIVE,
  title  = {RaJIVE: Robust Angle Based Joint and Individual Variation Explained},
  author = {Ponzi, Erica and Ghosh, Abhik},
  year   = {2021},
  note   = {R package version 1.0},
  doi    = {10.32614/CRAN.package.RaJIVE},
  url    = {https://CRAN.R-project.org/package=RaJIVE}
}

Derived from the package DESCRIPTION, not from a citation file the authors wrote. If they publish one later, prefer it.

This is the citation for the package. It is not a citation for the R Observatory.

Cite this page

Use this when the claim is about a measurement on this page.

BibTeX

@misc{robservatoryRaJIVE,
  author    = {Balamuta, James Joseph},
  title     = {{R} {Observatory}: Metrics for {RaJIVE} version 1.0},
  year      = {2026},
  publisher = {HJJB, LLC},
  url       = {https://r-observatory.thecoatlessprofessor.com/packages/RaJIVE},
  note      = {Data set. Data release v2026-08-05}
}

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RaJIVE version 1.0 [Data set]. HJJB, LLC. Data release v2026-08-05. https://r-observatory.thecoatlessprofessor.com/packages/RaJIVE

RIS

TY  - DATA
AU  - Balamuta, James Joseph
TI  - R Observatory: Metrics for RaJIVE version 1.0
PY  - 2026
PB  - HJJB, LLC
N1  - Data release v2026-08-05
UR  - https://r-observatory.thecoatlessprofessor.com/packages/RaJIVE
ER  -

In prose

These package metrics were obtained from the R Observatory (Balamuta, 2026), data release v2026-08-05, https://r-observatory.thecoatlessprofessor.com/packages/RaJIVE.

Bound to data release v2026-08-05, which is what makes the numbers on this page reproducible. See how to cite.

Report a problem with this page →