RNAseqQC

0.2.1

Quality Control for RNA-Seq Data

0packages depend

3.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Frederik ZiebellFirst published 2022-03-177 releasesCRAN page ↗GitHub ↗

Functions for semi-automated quality control of bulk RNA-seq data.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("RNAseqQC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("frederikziebell/RNAseqQC")

Development version from frederikziebell/RNAseqQC. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rnaseqqc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 14.1 min · r-release-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-12
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-05
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-27
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-21
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 9 earlier snapshots

ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-28
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-16
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 88 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 72%
Documented parameters: 96%
Return-value docs: 100%
References docs: 0%

Downloads

3.8K

CRAN downloads in the past year

Rank #10,569 · ~10/day · ~317/mo

Releases R versions

Daily download trend is not available in this view yet.

28830 days

1K90 days

3.8K1 year

Compare downloads with other packages →

Also on159 r2u

Repository

GitHub ↗ frederikziebell/rnaseqqc

3Stars

1Forks

0Open issues

0Open PRs

0Releases

18Commits

3Contributors

License Apache-2.0 · 18 commits · Last activity 2026-02-16 · 0% stars, 30d

Stars over time

2024-08-01 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/frederikziebell/rnaseqqc on 2026-07-19.

Continuous integration (1)

GitHub Actions

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

27 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

LinkingTo (0)

none

Suggests (6)

rmarkdown knitr recount3 apeglm ggrastr gghighlight

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,271 (53%)Rd 783 (33%)Vignettes 332 (14%)Other 10 (0%)

Code characteristics

Cyclomatic complexity: 2.0 median / 17 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

22 18 exported

Complexity

4.1 avg / 17 max

Call network

22 nodes / 9 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
class	vector	–	–

People & History

People (3)

Maintainer (1)

Frederik Ziebell

Maintainer

Authors (1)

Frederik Ziebell

Author

GlaxoSmithKline Research & Development Limited

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.2.1Latest
2024-07-15 · current release · diff ↗
0.2.0
2024-07-01 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.4
2022-06-15 · diff ↗
0.1.3
2022-05-27 · diff ↗
0.1.2
2022-04-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.1
2022-03-18 · diff ↗
0.1.0
2022-03-17
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-03-17
Total releases: 7 / 4 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.0
Bundled data: 1.9 MB / 2 files
Download size: 3.8 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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