RDML

1.1

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files

2packages depend

6.9Kdownloads / year

55.3%test coverage

11/13checks pass

Overview

About

Maintained by Konstantin BlagodatskikhFirst published 2015-04-0612 releasesCRAN page ↗GitHub ↗

Imports real-time thermo cycler (qPCR) data from Real-time PCR Data Markup Language (RDML) and transforms to the appropriate formats of the 'qpcR' and 'chipPCR' packages, as described in Rodiger et al. (2017) doi:10.1093/bioinformatics/btx528. Contains a dendrogram visualization for the structure of RDML object and GUI for RDML editing.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("RDML", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("PCRuniversum/RDML")

Development version from PCRuniversum/RDML. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rdml

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RDML

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.2 min · r-devel-linux-x86_64-fedora-clang

Check history

NOTE2026-07-11
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

6.9K

CRAN downloads in the past year

Rank #12,094 · ~19/day · ~576/mo

RDML Releases R versions

Daily download trend is not available in this view yet.

24230 days

86190 days

6.9K1 year

Compare downloads with other packages →

Also on155 r2u38 autocran

Repository

GitHub ↗ pcruniversum/rdml

21Stars

8Forks

4Open issues

0Open PRs

0Releases

573Commits

5Contributors

pcrbioinformaticscranqpcrrrdml

573 commits · Last activity 2024-08-30 · +5% stars, 30d

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/pcruniversum/rdml on 2026-07-19.

Continuous integration (1)

Travis CI

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

23 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2.0

Imports (10)

checkmate data.table pipeR readxl rlist (>= 0.4)R6 stringrtoolsxml2 lubridate

LinkingTo (0)

none

Suggests (14)

chipPCR magrittr reshape2 qpcR dplyr ggplot2 knitr kfigr MBmca shiny shinyjs shinythemes V8 testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

PCRedux chipPCR

Code & Tests

People & History

People (4)

Maintainer (1)

Konstantin Blagodatskikh

Maintainer, Author · added in 1.1

Authors (4)

Konstantin Blagodatskikh

Maintainer, Author · added in 1.1

Michal Burdukiewicz

Author

Stefan Roediger

Author

Andrej-Nikolai Spiess

Author · added in 0.9-7

Listed in earlier versions (1)

Konstantin A. Blagodatskikh

no longer listed · 0.4-2 to 1.0

Package Timeline

12 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1Latest
2025-07-23 · current release · diff ↗
unarchivedReturned to CRAN
2025-07-23
archivedRemoved from CRAN
2025-06-12
issues were not corrected despite reminders
removedRemoved from CRAN
Version 0.8-2 was removed for policy violation
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0
2019-06-25 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.9-9
2017-09-25 · diff ↗
0.9-8
2017-09-05 · diff ↗

Show 12 earlier events

0.9-7
2017-07-31 · diff ↗
0.9-6
2017-04-24 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.9-5
2016-12-13 · diff ↗
R
R 3.3.0 released · 2016-05-03
0.9-1
2015-07-22 · diff ↗
0.8-4
2015-04-21 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.8-3
2015-04-08 · diff ↗
0.8-2
2015-04-07 · diff ↗
0.4-2
2015-04-06
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2015-04-06
Total releases: 12 / 11 yrs
License: MIT + file LICENSE OSI
Download size: 790 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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