RCytoGPS

1.2.13

Using Cytogenetics Data in R

0packages depend

2.7Kdownloads / year

91.1%test coverage

13/13checks pass

Overview

About

Maintained by Kevin R. CoombesFirst published 2020-11-198 releasesCRAN page ↗

Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then import the results into R for further analysis and graphing.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("RCytoGPS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rcytogps

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-RCytoGPS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.85

91.1%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

2.7K

CRAN downloads in the past year

Rank #17,488 · ~7/day · ~225/mo

Releases R versions

Daily download trend is not available in this view yet.

20930 days

64690 days

2.7K1 year

Compare downloads with other packages →

Also on104 r2u33 autocran

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.4

Imports (4)

methodsgraphicsgrDevicesrjson

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown Mercator

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Kevin R. Coombes

Author, Maintainer

Authors (2)

Kevin R. Coombes

Author, Maintainer

Dwayne Tally

Author

Listed in earlier versions (1)

Coombes

no longer listed · 1.2.7 to 1.2.13

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

1.2.13Latest
2026-07-06 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.2.10
2026-01-29 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.2.9
2025-04-08 · diff ↗
1.2.7
2024-09-04 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.2.5
2023-11-27 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.2.1
2021-09-17 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.1.1
2021-02-10 · diff ↗
1.0.1
2020-11-19
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-19
Total releases: 8 / 6 yrs
License: Apache License (== 2.0)
Minimum R: ≥ 4.4
Bundled data: 25 KB / 2 files
Download size: 928 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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