RCPA

Description

Provides a set of functions to perform pathway analysis and meta-analysis from multiple gene expression datasets, as well as visualization of the results. This package wraps functionality from the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu et al. (2012) <https://CRAN.R-project.org/package=CePa>.

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CRAN Check Status

Packages required but not available:
  'AnnotationDbi', 'SummarizedExperiment', 'DESeq2', 'GEOquery'

Packages suggested but not available for checking:
  'ROntoTools', 'hgu133plus2.db', 'org.Hs.eg.db', 'oligo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

Package suggested but not available for checking: ‘hgu133plus2.db’

Check History

Packages required but not available:
  'AnnotationDbi', 'SummarizedExperiment', 'DESeq2', 'GEOquery'

Packages suggested but not available for checking:
  'ROntoTools', 'hgu133plus2.db', 'org.Hs.eg.db', 'oligo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

Package suggested but not available for checking: ‘hgu133plus2.db’

Dependency Network

Version History