PeakError

2023.9.4

Compute the Label Error of Peak Calls

2packages depend

3.7Kdownloads / year

93.9%test coverage

11/13checks pass

Overview

About

Maintained by Toby Dylan HockingFirst published 2017-06-203 releasesCRAN page ↗

Chromatin immunoprecipitation DNA sequencing results in genomic tracks that show enriched regions or peaks where proteins are bound. This package implements fast C code that computes the true and false positives with respect to a database of annotated region labels.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("PeakError", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-peakerror

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PeakError

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 56 s · r-oldrel-windows-x86_64

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

3.7K

CRAN downloads in the past year

Rank #14,571 · ~10/day · ~309/mo

PeakError Releases R versions

Daily download trend is not available in this view yet.

22030 days

73890 days

3.7K1 year

Compare downloads with other packages →

Also on397 r2u13 autocran12 c2d4u

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

testthat ggplot2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

PeakSegJoint FLOPART

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Toby Dylan Hocking

no longer listed · 2017.06.19 to 2023.9.4

Package Timeline

3 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2023.9.4Latest
2023-09-06 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
2021.7.1
2021-07-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
2017.06.19
2017-06-20
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-06-20
Total releases: 3 / 9 yrs
License: GPL-3 OSI
Download size: 7.6 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

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