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PCGSE

Principal Component Gene Set Enrichment

v0.5.0 · Aug 20, 2023 · GPL (>= 2)

Description

Contains logic for computing the statistical association of variable groups, i.e., gene sets, with respect to the principal components of genomic data.

Downloads

CRAN

280

Last 30 days

17275th

678

Last 90 days

2.7K

Last year

Trend: +54.7% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

23

Last 90 days

89

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

2

Last 7 days

8

Last 30 days

1

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

2 NOTE
11 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.

Line coverage

Expression

Tests / Examples

Functions

10 2 exported

Complexity

6 avg / 19 max

Call network

10 nodes / 7 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Compare versions

Code

Structure

Lines of code

955

Files

9

Compiled share

0%

Has compiled src

No

Language breakdown

R 605 (63.4%)Docs 350 (36.6%)

API

Exported functions

2

Internal functions

8

Recent export changes

v0.2+1 sgse
v0.1+1 pcgse

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.15.0

System requirements

C++ standard

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

5

First release

1977-08-08

Latest release

2023-08-20

Avg cadence

1259 days

Cold removal rate

Dep drift

3

LOC over versions

v0.1: 614 LOCv0.2: 958 LOCv0.3: 958 LOCv0.4: 958 LOCv0.5.0: 955 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies RMTstat MASS PCGSE

Version History

6 tracked
new 0.5.0 Mar 10, 2026
updated 0.5.0 ← 0.4 diff Aug 19, 2023
updated 0.4 ← 0.3 diff Mar 30, 2017
updated 0.3 ← 0.2 diff Sep 26, 2016
updated 0.2 ← 0.1 diff May 6, 2014
new 0.1 Mar 18, 2014