PCGII

1.1.2

Partial Correlation Graph with Information Incorporation

0packages depend

2.2Kdownloads / year

20.0%test coverage

13/13checks pass

Overview

About

Maintained by Hao WangFirst published 2024-02-021 releasesCRAN page ↗

Large-scale gene expression studies allow gene network construction to uncover associations among genes. This package is developed for estimating and testing partial correlation graphs with prior information incorporated.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("PCGII", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pcgii

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PCGII

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.3 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

2.2K

CRAN downloads in the past year

Rank #19,430 · ~6/day · ~187/mo

PCGII Releases R versions

Daily download trend is not available in this view yet.

21130 days

59690 days

2.2K1 year

Compare downloads with other packages →

Also on164 r2u36 autocran

Repository

GitHub ↗ haowang47/pcgii

1Stars

0Forks

0Open issues

0Open PRs

1Releases

51Commits

1Contributors

51 commits · Last activity 2024-02-06

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/haowang47/pcgii on 2026-07-19.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.3.0

Imports (6)

statscorpcor glmnet igraphMatrixdplyr

LinkingTo (0)

none

Suggests (5)

mvtnorm tidyverse knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Hao Wang

Author, Maintainer

Authors (3)

Hao Wang

Author, Maintainer

Peng Liu

Author

Yumou Qiu

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.2Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-02-02
Total releases: 1 / 2 yrs
License: MIT + file LICENSE OSI
Download size: 3.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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