OxyBS

1.5

Processing of Oxy-Bisulfite Microarray Data

0packages depend

7.1Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by E. Andres HousemanFirst published 2015-12-012 releasesCRAN page ↗

Provides utilities for processing of Oxy-Bisulfite microarray data (e.g. via the Illumina Infinium platform, http://www.illumina.com) with tandem arrays, one using conventional bisulfite conversion, the other using oxy-bisulfite conversion.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OxyBS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-oxybs

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OxyBS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OxyBS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 41 s · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 0%

Downloads

7.1K

CRAN downloads in the past year

Rank #7,302 · ~20/day · ~594/mo

Releases R versions

Daily download trend is not available in this view yet.

29630 days

1.4K90 days

7.1K1 year

Compare downloads with other packages →

Also on95 r2u9 autocran

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2.2

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

Rd 178 (68%)R 85 (32%)

Code characteristics

Cyclomatic complexity: 1.0 median / 3 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

6 0 exported

Complexity

1.5 avg / 3 max

Call network

6 nodes / 3 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

E. Andres Houseman

no longer listed · 1.0 to 1.5

Kevin C. Johnson

no longer listed · 1.0 to 1.5

Sc.D.

no longer listed · 1.0 to 1.5

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.5Latest
2017-02-20 · current release · diff ↗
R
R 3.3.0 released · 2016-05-03
1.0
2015-12-01
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-12-01
Total releases: 2 / 11 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.2.2
Bundled data: 23 KB / 1 file
Download size: 27 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →