OmopStudyBuilder

0.1.1

Build Reproducible Network Studies for OMOP Common Data Model

0packages depend

1.2Kdownloads / year

42.6%test coverage

13/13checks pass

Overview

About

Maintained by Folu AkintolaFirst published 2026-04-292 releasesCRAN page ↗GitHub ↗

Streamlines the setup and execution of network studies using the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM). Creates standardised project structures with template code, manages dependencies with 'renv', provides code review utilities, and supports containerised execution with 'Docker' for reproducible multi-site studies. Includes 'GitHub' integration for collaboration and version control.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OmopStudyBuilder", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("oxford-pharmacoepi/OmopStudyBuilder")

Development version from oxford-pharmacoepi/OmopStudyBuilder. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-omopstudybuilder

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OmopStudyBuilder

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OmopStudyBuilder

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.1 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.36

42.6%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-12
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-29
3 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE

Documentation

READMEYes · 483 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 50%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.2K

CRAN downloads in the past year

Rank #9,600 · ~3/day · ~96/mo

Releases R versions

Daily download trend is not available in this view yet.

26230 days

1.2K90 days

1.2K1 year

Compare downloads with other packages →

Also on20 r2u

Repository

GitHub ↗ oxford-pharmacoepi/omopstudybuilder

4Stars

1Forks

21Open issues

0Open PRs

0Releases

210Commits

6Contributors

License Apache-2.0 · 210 commits · Last activity 2026-07-13 · +100% stars, 30d

Stars over time

2026-04-22 · 12026-07-07 · 4

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/oxford-pharmacoepi/omopstudybuilder on 2026-07-19.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (5)

cli jsonlite omopgenerics rlang whisker

LinkingTo (0)

none

Suggests (13)

dplyr gert getPass gh here knitr processx purrr renv rmarkdown scales stringr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Folu Akintola

Author, Maintainer

Authors (3)

Folu Akintola

Author, Maintainer

Edward Burn

Author

Martí Català

Author

Contributors (1)

Marta Alcalde-Herraiz

Contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

0.1.1Latest
2026-05-12 · current release · diff ↗
0.1.0
2026-04-29
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-04-29
Total releases: 2 / 1 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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