OTrecod

0.1.2

Data Fusion using Optimal Transportation Theory

0packages depend

2.6Kdownloads / year

80.7%test coverage

0/13checks pass

Overview

About

Maintained by Gregory GuernecFirst published 2021-01-293 releasesCRAN page ↗

In the context of data fusion, the package provides a set of functions dedicated to the solving of 'recoding problems' using optimal transportation theory (Gares, Guernec, Savy (2019) doi:10.1515/ijb-2018-0106 and Gares, Omer (2020) doi:10.1080/01621459.2020.1775615). From two databases with no overlapping part except a subset of shared variables, the functions of the package assist users until obtaining a unique synthetic database, where the missing information is fully completed.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OTrecod", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-otrecod

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OTrecod

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OTrecod

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 11.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.15

80.7%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-07-13
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-12
0 OK · 11 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
NOTE2026-06-09
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-05-02
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-25
0 OK · 11 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,063 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 98%
Return-value docs: 100%
References docs: 65%

Downloads

2.6K

CRAN downloads in the past year

Rank #16,589 · ~7/day · ~217/mo

Releases R versions

Daily download trend is not available in this view yet.

18830 days

69490 days

2.6K1 year

Compare downloads with other packages →

Also on100 r2u22 autocran20 c2d4u

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (15)

statsdplyr mice missMDA plyr FactoMineR StatMatch proxy rdist ROI ROI.plugin.glpk ompr ompr.roi party vcd

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 6,608 (66%)Rd 2,651 (26%)Vignettes 757 (8%)

Code characteristics

Cyclomatic complexity: 14.0 median / 53 max
Test cases: 17 / 0.15 per code line

Test coverage

Line coverage

81%

Expression

82.5%

Tests / Examples

80.7% / – ex

Functions

20 17 exported

Complexity

20.7 avg / 53 max

Call network

20 nodes / 21 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

20 functions

Function	Cyclo	Coverage
OT_joint exp	37	61%
imput_cov exp	17	68%
proxim_dist exp	35	69%
merge_dbs exp	34	77%
OT_outcome exp	35	80%
transfo_dist exp	53	82%

Datasets

Bundled datasets · 6

Name	Class	Rows × Cols	Also ships in
api29	data.frame	418 × 12	–
api35	data.frame	362 × 12	–
ncds_14	data.frame	5,476 × 6	–
ncds_5	data.frame	365 × 6	–
simu_data	data.frame	700 × 8	–
tab_test	data.frame	10,000 × 6	–

People & History

People (6)

Maintainer (1)

Gregory Guernec

Author, Maintainer

Authors (2)

Gregory Guernec

Author, Maintainer

Valerie Gares

Author

Contributors (4)

Pierre Navaro

Contributor

Jeremy Omer

Contributor

Philippe Saint-Pierre

Contributor

Nicolas Savy

Contributor

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.2Latest
2022-10-05 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.1
2021-09-20 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.1.0
2021-01-29
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-01-29
Total releases: 3 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 109 KB / 6 files
Download size: 357 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Missing Data

Report a problem with this page →