OTUtable
North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
Description
Analyses of OTU tables produced by 16S rRNA gene amplicon sequencing, as well as example data. It contains the data and scripts used in the paper Linz, et al. (2017) "Bacterial community composition and dynamics spanning five years in freshwater bog lakes," <doi: 10.1128/mSphere.00169-17>.
Downloads
198
Last 30 days
23212th
507
Last 90 days
2.5K
Last year
Trend: +48.9% (30d vs prior 30d)
0
Last 30 days
23
Last 90 days
98
Last year
Trend: -100% (30d vs prior 30d)
4
Last 7 days
15
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Alexandra",
family = "Linz",
role = c("aut", "cre"),
email = "amlinz16@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Alexandra",
family = "Linz",
role = c("aut", "cre"),
email = "amlinz16@gmail.com")
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Alexandra",
family = "Linz",
role = c("aut", "cre"),
email = "amlinz16@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Alexandra",
family = "Linz",
role = c("aut", "cre"),
email = "amlinz16@gmail.com")
as necessary.
Code
Structure
Lines of code
1,310
Files
36
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
0
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
–
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
4
First release
2016-03-17
Latest release
2018-05-26
Avg cadence
331 days
Cold removal rate
100%
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.