MultiNMix

0.1.0

Multi-Species N-Mixture (MNM) Models with 'nimble'

0packages depend

1.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Niamh MimnaghFirst published 2025-03-191 releasesCRAN page ↗GitHub ↗

Simulating data and fitting multi-species N-mixture models using 'nimble'. Includes features for handling zero-inflation and temporal correlation, Bayesian inference, model diagnostics, parameter estimation, and predictive checks. Designed for ecological studies with zero-altered or time-series data. Mimnagh, N., Parnell, A., Prado, E., & Moral, R. A. (2022) doi:10.1007/s10651-022-00542-7. Royle, J. A. (2004) doi:10.1111/j.0006-341X.2004.00142.x.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("MultiNMix", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("niamhmimnagh/MultiNMix")

Development version from niamhmimnagh/MultiNMix. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-multinmix

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MultiNMix

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.2 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

1.9K

CRAN downloads in the past year

Rank #21,111 · ~5/day · ~161/mo

MultiNMix Releases R versions

Daily download trend is not available in this view yet.

20330 days

55390 days

1.9K1 year

Compare downloads with other packages →

Also on94 r2u25 autocran

Repository

GitHub ↗ niamhmimnagh/multinmix

1Stars

0Forks

1Open issues

0Open PRs

0Releases

28Commits

1Contributors

License GPL-3.0 · 28 commits · Last activity 2025-03-03

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/niamhmimnagh/multinmix on 2026-07-19.

Lint, format, editor (1)

RStudio project

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5nimble

Imports (8)

clusterGeneration mvtnorm extraDistr rstanstatsabindmethodscoda

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Niamh Mimnagh

Author, Maintainer

Authors (2)

Niamh Mimnagh

Author, Maintainer

Rafael de Andrade Moral

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-03-19
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Download size: 52 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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