MuPETFlow

0.1.1

Multiple Ploidy Estimation Tool for all Species Compatible with Flow Cytometry

0packages depend

2.1Kdownloads / year

54.5%test coverage

13/13checks pass

Overview

About

Maintained by Cintia Gómez-MuñozFirst published 2025-01-072 releasesCRAN page ↗

A graphical user interface tool to estimate ploidy from DNA cells stained with fluorescent dyes and analyzed by flow cytometry, following the methodology of Gómez-Muñoz and Fischer (2024) doi:10.1101/2024.01.24.577056. Features include multiple file uploading and configuration, peak fluorescence intensity detection, histogram visualizations, peak error curation, ploidy and genome size calculations, and easy results export.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("MuPETFlow", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mupetflow

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MuPETFlow

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.7 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-04-18
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-16
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

2.1K

CRAN downloads in the past year

Rank #21,285 · ~6/day · ~176/mo

MuPETFlow Releases R versions

Daily download trend is not available in this view yet.

18230 days

54890 days

2.1K1 year

Compare downloads with other packages →

Also on94 r2u33 autocran

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (11)

BiocManager dplyr DT ggplot2 ggrepel gridExtra markdown shiny shinythemes tidyr zoo

LinkingTo (0)

none

Suggests (3)

knitr flowCore rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Cintia Gómez-Muñoz

Author, Maintainer

Authors (2)

Cintia Gómez-Muñoz

Author, Maintainer

Gilles Fischer

Author

Package Timeline

2 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
2025-01-15 · current release · diff ↗
0.1.0
2025-01-07
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-01-07
Total releases: 2 / 1 yrs
License: GPL (>= 3) OSI
Download size: 532 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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