MolgenisArmadillo

3.0.0

Armadillo Client for the Armadillo Service

1packages depend

8.3Kdownloads / year

86.2%test coverage

13/13checks pass

Overview

About

Maintained by Mariska SlofstraFirst published 2021-02-0413 releasesCRAN page ↗GitHub ↗

A set of functions to manage data shared on a 'MOLGENIS Armadillo' server.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MolgenisArmadillo", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("molgenis/molgenis-r-armadillo")

Development version from molgenis/molgenis-r-armadillo. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-molgenisarmadillo

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MolgenisArmadillo

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MolgenisArmadillo

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.4 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 1.15

86.2%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 329 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 95%
Return-value docs: 58%
References docs: 0%

Downloads

8.3K

CRAN downloads in the past year

Rank #4,023 · ~23/day · ~694/mo

Releases R versions

Daily download trend is not available in this view yet.

59130 days

2.4K90 days

8.3K1 year

Compare downloads with other packages →

Also on127 r2u28 autocran

Repository

GitHub ↗ molgenis/molgenis-r-armadillo

3Stars

6Forks

0Open issues

0Open PRs

43Releases

790Commits

14Contributors

hacktoberfest

790 commits · Last activity 2026-05-08

Stars over time

2023-12-06 · 32026-07-07 · 3

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/molgenis/molgenis-r-armadillo on 2026-07-19.

Continuous integration (2)

GitHub ActionsCircleCI

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (15)

base64enc httr urltools dplyr purrr stringr tidyr tibble MolgenisAuth arrow rlist httr2 readr cli lifecycle

LinkingTo (0)

none

Suggests (8)

stringi withr knitr testthat webmockr mockerydatasetsrmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

dsROCrate

Code & Tests

Code Composition

R 4,389 (72%)Rd 763 (13%)Vignettes 474 (8%)Other 436 (7%)

Code characteristics

Cyclomatic complexity: 1.0 median / 7 max
Test cases: 142 / 1.15 per code line

Test coverage

Line coverage

86%

Expression

85.5%

Tests / Examples

86.2% / 0% ex

Functions

88 24 exported

Complexity

1.8 avg / 7 max

Call network

88 nodes / 117 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

88 functions

Function	Cyclo	Coverage
.compress_resource	1	0%
.compress_table	1	0%
.get_info	1	0%
.get_token	1	0%
.load_linked_table	1	0%
.load_resource	1	0%

People & History

People (6)

Maintainer (1)

Mariska Slofstra

Author, Maintainer · added in 1.1.3

Authors (6)

Mariska Slofstra

Author, Maintainer · added in 1.1.3

Tim Cadman

Author · added in 2.6.3

Author

Author

Author

Author

Package Timeline

13 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
3.0.0Latest
2026-03-26 · current release · diff ↗
2.9.3
2025-12-06 · diff ↗
2.9.1
2025-06-13 · diff ↗
R
R 4.5.0 released · 2025-04-11
2.9.0
2025-02-28 · diff ↗
2.7.0
2024-10-14 · diff ↗
2.6.3
2024-06-13 · diff ↗
R
R 4.4.0 released · 2024-04-24
2.3.0
2023-11-17 · diff ↗
2.1.2
2023-10-27 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.0.0
2023-02-23 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.1.3
2022-04-01 · diff ↗
1.0.3
2021-10-12 · diff ↗

Show 4 earlier events

R
R 4.1.0 released · 2021-05-18
1.0.1
2021-02-09 · diff ↗
1.0.0
2021-02-04
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-02-04
Total releases: 13 / 5 yrs
License: LGPL (>= 2.1)
Minimum R: ≥ 4.1.0
Download size: 2.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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