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MicrobTiSDA

Microbiome Time-Series Data Analysis

v0.1.0 · Sep 22, 2025 · MIT + file LICENSE

Description

Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.

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11 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    help   1.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    help   1.6Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.7Mb
    help   1.7Mb
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    help   1.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    help   1.6Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.7Mb
    help   1.7Mb

Dependency Network

Dependencies Reverse dependencies caret cluster dplyr ggdendro ggplot2 ggraph MASS mgcv plyr pracma randomForest reshape2 scales tibble tidygraph +3 more dependencies MicrobTiSDA

Version History

new 0.1.0 Mar 9, 2026