MKomics

0.8

Omics Data Analysis

1packages depend

2.7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Matthias KohlFirst published 2020-02-193 releasesCRAN page ↗

Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), doi:10.1093/nar/gkv007 ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).

Install

R (CRAN)Ubuntu (r2u)

install.packages("MKomics", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mkomics

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 3.6 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-05-14
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-30
11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 94%

Downloads

2.7K

CRAN downloads in the past year

Rank #13,461 · ~7/day · ~223/mo

Releases R versions

Daily download trend is not available in this view yet.

19730 days

80590 days

2.7K1 year

Compare downloads with other packages →

Also on101 r2u

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (10)

statsutilsgraphicsgrDevicesRColorBrewer robustbase limmagridcirclize ComplexHeatmap

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

RFLPtools

Code & Tests

Code Composition

Rd 1,070 (44%)R 967 (40%)Vignettes 322 (13%)Other 46 (2%)

Code characteristics

Cyclomatic complexity: 9.0 median / 14 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

20 20 exported

Complexity

8.2 avg / 14 max

Call network

20 nodes / 2 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Matthias Kohl

Author, Maintainer

Authors (1)

Matthias Kohl

Author, Maintainer

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

0.8Latest
2026-05-07 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.7
2021-08-08 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.5
2020-02-19
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-02-19
Total releases: 3 / 6 yrs
License: LGPL-3 OSI
Minimum R: ≥ 4.0.0
Download size: 293 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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