LOMAR

0.5.2

Localization Microscopy Data Analysis

0packages depend

4.4Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Jean-Karim HericheFirst published 2021-12-157 releasesCRAN page ↗

Read, register and compare point sets from single molecule localization microscopy.

Install

R (CRAN)Ubuntu (r2u)

install.packages("LOMAR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lomar

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-oldrel-macos-arm64

Slowest check: 5.8 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.04

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

ERROR2026-03-10
11 OK · 1 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE

Documentation

READMEYes · 149 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

4.4K

CRAN downloads in the past year

Rank #11,706 · ~12/day · ~366/mo

Releases R versions

Daily download trend is not available in this view yet.

25730 days

91090 days

4.4K1 year

Compare downloads with other packages →

Also on461 r2u

Repository

Repository ↗ heriche/lomar

Repository practices

Upstream repositoryBeta

Repository git.embl.org/heriche/lomar is linked, but repository-practices checks have not run for it yet. Checks are GitHub-only for now.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.6.0

Imports (21)

Rcpp FNNstatsdata.tableparalleldoParallel foreach proxy reshape2 pracma transport RANN ff dbscan EBImagetoolsrhdf5 mclustmethodsabind alphashape3d

LinkingTo (2)

BH Rcpp

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

C++ 13,228 (49%)C 8,508 (32%)R 3,454 (13%)Rd 1,573 (6%)

Code characteristics

Cyclomatic complexity: 3.0 median / 51 max
Test cases: 15 / 0.04 per code line
System requirements: 2 external

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1022 46 exported

Complexity

7.8 avg / 51 max

Call network

1022 nodes / 1372 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Jean-Karim Heriche

Maintainer, Author

Authors (1)

Jean-Karim Heriche

Maintainer, Author

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.5.2Latest
2026-02-05 · current release · diff ↗
0.5.1
2025-12-22 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.5.0
2024-09-26 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.4.0
2023-12-20 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.2.1
2022-03-16 · diff ↗
0.2.0
2022-02-23 · diff ↗
unarchivedReturned to CRAN
2022-02-23
archivedRemoved from CRAN
2022-02-21
requires archived package 'TDA'
0.1.0
2021-12-15
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-12-15
Total releases: 7 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.6.0
Download size: 521 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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