KSEAapp

2.0

Kinase-Substrate Enrichment Analysis

0packages depend

5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Danica WiredjaFirst published 2017-05-022 releasesCRAN page ↗

Infers relative kinase activity from phosphoproteomics data using the method described by Casado et al. (2013) doi:10.1126/scisignal.2003573.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("KSEAapp", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-kseaapp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-KSEAapp

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-KSEAapp

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.3 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-23
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

CRAN downloads in the past year

Rank #4,966 · ~14/day · ~415/mo

Releases R versions

Daily download trend is not available in this view yet.

44330 days

1.8K90 days

5K1 year

Compare downloads with other packages →

Also on106 r2u35 autocran

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (3)

gplotsgraphicsstats

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Danica Wiredja

Author, Maintainer · added in 2.0

Authors (1)

Danica Wiredja

Author, Maintainer · added in 2.0

Listed in earlier versions (1)

Danica D. Wiredja

no longer listed · 0.99.0

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.0Latest
2026-03-14 · current release · diff ↗
0.99.0
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2017-05-02
Total releases: 2 / 9 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Bundled data: 581 KB / 5 files
Download size: 605 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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