JUMP

1.0.2

Replicability Analysis of High-Throughput Experiments

0packages depend

6.3Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Yan LiFirst published 2023-05-242 releasesCRAN page ↗

Implementing a computationally scalable false discovery rate control procedure for replicability analysis based on maximum of p-values. Please cite the manuscript corresponding to this package [Lyu, P. et al., (2023), doi:10.1093/bioinformatics/btad366].

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("JUMP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jump

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-JUMP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-JUMP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 0%

Downloads

6.3K

CRAN downloads in the past year

Rank #7,290 · ~17/day · ~529/mo

Releases R versions

Daily download trend is not available in this view yet.

18030 days

1.3K90 days

6.3K1 year

Compare downloads with other packages →

Also on370 r2u3 autocran

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (4)

R >= 4.1.2Rcppsplinesstats

Imports (0)

none

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Yan Li

Author, Maintainer, Copyright holder

Authors (4)

Yan Li

Author, Maintainer, Copyright holder

Hongyuan Cao

Author, Contributor

Pengfei Lyu

Author, Contributor

Xiaoquan Wen

Author

Contributors (2)

Hongyuan Cao

Author, Contributor

Pengfei Lyu

Author, Contributor

Yan Li

Author, Maintainer, Copyright holder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.2Latest
2025-05-30 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.1
2023-05-24
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-05-24
Total releases: 2 / 3 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.2
Download size: 3.7 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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