ImprintCapASM

0.1.1

Allele-Specific Methylation Analysis for Imprinted DMR Diagnostics

0packages depend

157downloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Subham SahaFirst published 2026-07-011 releasesCRAN page ↗GitHub ↗

Provides functions for SNP-phased allele-specific methylation (ASM) analysis across the 41 canonical human imprinted differentially methylated regions (DMRs). Reads are assigned to REF or ALT alleles based on bisulfite-aware SNP detection, enabling diagnosis of imprinting disorders from whole-genome bisulfite sequencing data. https://github.com/19-saha/ImprintCapASM.

Install

R (CRAN)pak (dev)

install.packages("ImprintCapASM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("19-saha/ImprintCapASM")

Development version from 19-saha/ImprintCapASM. Installs pak first if it is not already available.

Health

CRAN checks

13OK

Slowest check: 6.4 min · r-devel-linux-x86_64-fedora-gcc

Code health

Yes

Tests · ratio 0.08

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

Yes

README

Dependencies · direct

Check history

OK2026-07-01
6 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

157

CRAN downloads in the past year

Rank #24,246 · ~0/day · ~13/mo

ImprintCapASM Releases R versions

Daily download trend is not available in this view yet.

15730 days

15790 days

1571 year

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Repository

GitHub ↗ 19-saha/imprintcapasm

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (7)

data.table readxl writexl vcfR ggplot2 Rsamtoolstools

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,173 (74%)Rd 301 (19%)Vignettes 104 (7%)

Code characteristics

Cyclomatic complexity: 15.5 median / 162 max
Test cases: 6 / 0.08 per code line
Documented parameters: 100%
System requirements: 1 external

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

4 4 exported

Complexity

51 avg / 162 max

Call network

4 nodes / 3 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Maintainer (1)

Subham Saha

Author, Maintainer, Copyright holder

Authors (3)

Subham Saha

Author, Maintainer, Copyright holder

Frederic Brioude

Author, Funder

Francesco Cecere

Author

Subham Saha

Author, Maintainer, Copyright holder

Funders (1)

Frederic Brioude

Author, Funder

Release timeline

1 release. R releases are shown for context.

0.1.1Latest
2026-07-01 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-07-01
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet