Holomics
A User-Friendly R 'shiny' Application for Multi-Omics Data Integration and Analysis
Description
A 'shiny' application, which allows you to perform single- and multi-omics analyses using your own omics datasets. After the upload of the omics datasets and a metadata file, single-omics is performed for feature selection and dataset reduction. These datasets are used for pairwise- and multi-omics analyses, where automatic tuning is done to identify correlations between the datasets - the end goal of the recommended 'Holomics' workflow. Methods used in the package were implemented in the package 'mixomics' by Florian Rohart,Benoît Gautier,Amrit Singh,Kim-Anh Lê Cao (2017) <doi:10.1371/journal.pcbi.1005752> and are described there in further detail.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
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installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
app 1.7Mb
doc 3.2Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
app 1.7Mb
doc 3.2Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
app 1.7Mb
doc 3.2Mb
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Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
app 1.7Mb
doc 3.2Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
app 1.7Mb
doc 3.2Mb
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
app 1.7Mb
doc 3.2Mb