HDSpatialScan

1.0.5

Multivariate and Functional Spatial Scan Statistics

0packages depend

3.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Camille FREVENTFirst published 2021-05-216 releasesCRAN page ↗

Allows to detect spatial clusters of abnormal values on multivariate or functional data (Frévent et al. (2022) doi:10.32614/RJ-2022-045). See also: Frévent et al. (2023) doi:10.1093/jrsssc/qlad017, Smida et al. (2022) doi:10.1016/j.csda.2021.107378, Frévent et al. (2021) doi:10.1016/j.spasta.2021.100550. Cucala et al. (2019) doi:10.1016/j.spasta.2018.10.002, Cucala et al. (2017) doi:10.1016/j.spasta.2017.06.001, Jung and Cho (2015) doi:10.1186/s12942-015-0024-6, Kulldorff et al. (2009) doi:10.1186/1476-072X-8-58.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("HDSpatialScan", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hdspatialscan

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-HDSpatialScan

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HDSpatialScan

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 10.8 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 25%

Downloads

3.1K

CRAN downloads in the past year

Rank #12,312 · ~9/day · ~261/mo

Releases R versions

Daily download trend is not available in this view yet.

28930 days

83290 days

3.1K1 year

Compare downloads with other packages →

Also on409 r2u1 autocran

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (18)

Rcppparallelpbapply purrr matrixStats SpatialNP sp sf DT TeachingDemos plotrix fmsb swfscMisc rastergraphicsstatsgrDevicesmethods

LinkingTo (2)

RcppArmadillo Rcpp

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (7)

Maintainer (1)

Camille FREVENT

Author, Maintainer, Copyright holder

Authors (7)

Camille FREVENT

Author, Maintainer, Copyright holder

Author

Author

Author

Author

Author

Author

Author, Maintainer, Copyright holder

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.5Latest
2025-06-05 · current release · diff ↗
unarchivedReturned to CRAN
2025-06-05
archivedRemoved from CRAN
2025-05-15
requires archived package 'swfscMisc'
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.4
2023-05-25 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.3
2022-08-05 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.2
2021-07-16 · diff ↗
1.0.1
2021-05-27 · diff ↗
1.0.0
2021-05-21
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-05-21
Total releases: 6 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 341 KB / 4 files
Download size: 393 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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