GillespieSSA2
Gillespie's Stochastic Simulation Algorithm for Impatient People
Description
A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) <doi:10.1038/s41467-021-24152-2>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
CRAN incoming feasibility
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
CRAN incoming feasibility
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
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installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 1.7Mb
libs 3.4Mb
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 1.7Mb
libs 3.4Mb
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Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
CRAN incoming feasibility
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
CRAN incoming feasibility
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 1.7Mb
libs 3.4Mb
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 1.7Mb
libs 3.4Mb