GerminaR

2.1.6

Indices and Graphics for Assess Seed Germination Process

0packages depend

4.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Flavio Lozano-IslaFirst published 2016-12-2414 releasesCRAN page ↗GitHub ↗

A collection of different indices and visualization techniques for evaluate the seed germination process in ecophysiological studies (Lozano-Isla et al. 2019) doi:10.1111/1440-1703.1275.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GerminaR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("flavjack/germinar")

Development version from flavjack/germinar. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-germinar

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GerminaR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GerminaR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.3 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

96%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-01
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-22
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 158 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 72%
Documented parameters: 100%
Return-value docs: 86%
References docs: 25%

Downloads

4.6K

CRAN downloads in the past year

Rank #9,149 · ~13/day · ~381/mo

Releases R versions

Daily download trend is not available in this view yet.

36730 days

1.2K90 days

4.6K1 year

Compare downloads with other packages →

Also on108 r2u37 autocran

Repository

GitHub ↗ flavjack/germinar

5Stars

3Forks

0Open issues

0Open PRs

8Releases

335Commits

17Contributors

germianaquantshinyappseed-germinationr-packageinkaverseplant-science

335 commits · Last activity 2026-05-05 · 0% stars, 30d

Stars over time

2024-11-08 · 42026-07-07 · 5

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/flavjack/germinar on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Governance and community (1)

Funding

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (5)

R >= 4.1.0shiny agricolae ggplot2 dplyr

Imports (4)

tidyr tibble purrr DT

LinkingTo (0)

none

Suggests (7)

gsheet cowplot knitr rmarkdown bookdown quarto inti

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,572 (48%)Rd 883 (27%)Vignettes 462 (14%)Other 374 (11%)

Code characteristics

Cyclomatic complexity: 1.0 median / 79 max
System requirements: 1 external

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

24 22 exported

Complexity

6.2 avg / 79 max

Call network

24 nodes / 28 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
prosopis	data.frame	80 × 15	–

People & History

People (8)

Maintainer (1)

Flavio Lozano-Isla

Author, Maintainer

Authors (5)

Flavio Lozano-Isla

Author, Maintainer

Omar Benites Alfaro

Author · added in 1.1

Denise Garcia de Santana

Author · added in 1.1

Marcelo F. Pompelli

Author, Thesis advisor

Marli A. Ranal

Author · added in 1.1

Contributors (1)

Inkaverse

Contributor · added in 2.1.4

Federal Rural University of Pernambuco

Federal University of Pernambuco

Listed in earlier versions (2)

Omar Benites-Alfaro

no longer listed · 1.0

Flavio Lozano Isla

no longer listed · 1.1 to 1.4.2

Package Timeline

14 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.1.6Latest
2025-10-21 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.1.5
2025-03-05 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.1.4
2022-05-19 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.1.3
2021-10-10 · diff ↗
2.1.2
2021-06-11 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.1.1
2021-04-23 · diff ↗
2.0.1
2020-10-25 · diff ↗
2.0.0
2020-09-01 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.4.2
2020-03-28 · diff ↗

Show 11 earlier events

1.4
2020-03-01 · diff ↗
unarchivedReturned to CRAN
2020-02-17
archivedRemoved from CRAN
2020-02-11
check problems were not corrected in time
R
R 3.6.0 released · 2019-04-26
1.3
2019-04-18 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.2
2017-10-25 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.1
2017-03-09 · diff ↗
1.0
2016-12-24
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-12-24
Total releases: 14 / 10 yrs
License: GPL-3 | file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 0.8 KB / 1 file
Download size: 1.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →