GenomeAdmixR

2.1.13.2

Simulate Admixture of Genomes

0packages depend

3.8Kdownloads / year

87.8%test coverage

13/13checks pass

Overview

About

Maintained by Thijs JanzenFirst published 2021-01-2110 releasesCRAN page ↗GitHub ↗

Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2021) doi:10.1111/2041-210X.13612.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("GenomeAdmixR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("thijsjanzen/GenomeAdmixR")

Development version from thijsjanzen/GenomeAdmixR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genomeadmixr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GenomeAdmixR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 7.6 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.49

87.8%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-29
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-25
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-22
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-20
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 7 earlier snapshots

NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-09
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-08
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-19
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-12
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 814 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: 98%
Return-value docs: 100%
References docs: 5%

Downloads

3.8K

CRAN downloads in the past year

Rank #7,376 · ~10/day · ~315/mo

Releases R versions

Daily download trend is not available in this view yet.

35730 days

1.3K90 days

3.8K1 year

Compare downloads with other packages →

Also on458 r2u

Repository

GitHub ↗ thijsjanzen/genomeadmixr

5Stars

3Forks

0Open issues

0Open PRs

3Releases

702Commits

3Contributors

702 commits · Last activity 2026-05-14

Stars over time

2023-11-12 · 52026-07-07 · 5

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/thijsjanzen/genomeadmixr on 2026-07-30.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (9)

ggplot2 ggridges hierfstat Rcpp RcppParallel rlang stringr tibble vcfR

LinkingTo (3)

Rcpp RcppArmadillo RcppParallel

Suggests (8)

dplyr junctions knitr magrittr rmarkdown testit testthat pbapply

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Thijs Janzen

Author, Maintainer

Authors (1)

Thijs Janzen

Author, Maintainer

Contributors (2)

Richèl J.C. Bilderbeek

Contributor

Fernando Diaz G.

Contributor

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

2.1.13.2Latest
2026-05-14 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
2.1.12
2025-06-20 · diff ↗
2.1.11
2025-05-20 · diff ↗
2.1.10
2025-05-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
2.1.7
2022-03-01 · diff ↗
unarchivedReturned to CRAN
2022-03-01
archivedRemoved from CRAN
2022-01-19
policy violation On not removing debugging information
2.1.2
2022-01-15 · diff ↗
R
R 4.1.0 released · 2021-05-18
2.1.1
2021-03-30 · diff ↗
2.0.2
2021-02-26 · diff ↗

Show 3 earlier events

1.1.3
2021-01-25 · diff ↗
1.1.2
2021-01-21
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-01-21
Total releases: 10 / 5 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 298 KB / 1 file
Download size: 1.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →