GenePopStats

0.1.0

Population Genetics Statistics for Selective Sweep

0packages depend

4.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Abhik SarkarFirst published 2025-09-161 releasesCRAN page ↗

Selective Sweep can be calculated by five significant Population Genetics Statistics such as "Pi", "Wattersons_theta", "Tajima_D", "Kelly_ZnS" and "Omega" Statistics in specified chromosomal region. It has been developed by using the concept of "Kern" and "Schrider" (2018)doi:10.1534/g3.118.200262.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("GenePopStats", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genepopstats

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GenePopStats

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 1.9 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

README

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

4.6K

CRAN downloads in the past year

Rank #8,479 · ~13/day · ~382/mo

Releases R versions

Daily download trend is not available in this view yet.

44030 days

1.4K90 days

4.6K1 year

Compare downloads with other packages →

Also on50 r2u

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (0)

none

Imports (1)

vcfR

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 187 (87%)Rd 29 (13%)

Code characteristics

Cyclomatic complexity: 28.0 median / 28 max
Documented parameters: 100%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1 1 exported

Complexity

28 avg / 28 max

Call network

1 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (11)

Maintainer (1)

Abhik Sarkar

Author, Maintainer

Authors (11)

Abhik Sarkar

Author, Maintainer

Neeraj Budhlakoti

Author

Krishna Kumar Chaturvedi

Author

Author

Author

Author

Author

Dwijesh Chandra Mishra

Author

Ranjit Kumar Paul

Author

Dipro Sinha

Author

Md Yeasin

Author

Release timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-09-16
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Download size: 220 KB
Installed size: not tracked yet
With dependencies: not tracked yet