GWASinspector

1.7.4

Comprehensive and Easy to Use Quality Control of GWAS Results

0packages depend

7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Alireza AniFirst published 2019-08-0224 releasesCRAN page ↗

When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("GWASinspector", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gwasinspector

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GWASinspector

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.2 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

CRAN downloads in the past year

Rank #11,714 · ~19/day · ~585/mo

Releases R versions

Daily download trend is not available in this view yet.

30330 days

88890 days

7K1 year

Compare downloads with other packages →

Also on125 r2u22 autocran

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2

Imports (15)

ini logger data.table hashtoolsggplot2 knitr rmarkdown gridExtragridRSQLite kableExtra (>= 0.8)methodsR.utils openxlsx

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Alireza Ani

Author, Maintainer

Authors (4)

Alireza Ani

Author, Maintainer

Ilja M. Nolte

Author

Ahmad Vaez

Author

Peter J. van der Most

Author

Package Timeline

24 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.7.4Latest
2026-01-29 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.7.3
2025-03-30 · diff ↗
1.7.1
2024-05-06 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.6.5
2023-09-27 · diff ↗
1.6.4
2023-05-15 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.6.1
2023-01-09 · diff ↗
1.6.0
2022-11-22 · diff ↗
1.5.7.2
2022-04-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.5.7.1
2022-01-16 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.5.2
2021-03-22 · diff ↗

Show 16 earlier events

1.5.1
2021-02-08 · diff ↗
1.4.8.2
2020-10-01 · diff ↗
1.4.8
2020-07-28 · diff ↗
1.4.7.1
2020-05-11 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.4.7
2020-04-22 · diff ↗
1.4.6.7
2020-03-31 · diff ↗
1.4.6
2020-03-23 · diff ↗
1.4.5
2020-03-15 · diff ↗
1.4.4
2020-02-25 · diff ↗
1.4.3
2020-02-18 · diff ↗
1.4.2
2020-01-19 · diff ↗
1.3.4
2019-12-01 · diff ↗
1.2
2019-09-25 · diff ↗
1.1.2
2019-08-02
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-08-02
Total releases: 24 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.2
Download size: 578 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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