GUTS

1.2.6

Fast Calculation of the Likelihood of a Stochastic Survival Model

0packages depend

4.3Kdownloads / year

79.3%test coverage

12/13checks pass

Overview

About

Maintained by Oliver JakobyFirst published 2011-06-1721 releasesCRAN page ↗

Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood (see Albert, C., Vogel, S. and Ashauer, R. (2016) doi:10.1371/journal.pcbi.1004978).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GUTS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-guts

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GUTS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GUTS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.4 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 1.51

79.3%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-06
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-04
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 65%
Return-value docs: 100%
References docs: 67%

Downloads

4.3K

CRAN downloads in the past year

Rank #10,487 · ~12/day · ~356/mo

Releases R versions

Daily download trend is not available in this view yet.

29430 days

98090 days

4.3K1 year

Compare downloads with other packages →

Also on409 r2u4 autocran

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.5.0methodsRcpp

Imports (0)

none

LinkingTo (1)

Rcpp

Suggests (7)

knitr rmarkdown adaptMCMC xlsx drc testthat withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Oliver Jakoby

Author, Maintainer · added in 1.1.0

Authors (5)

Oliver Jakoby

Author, Maintainer · added in 1.1.0

Carlo Albert

Author · added in 0.4.14

Dirk Nickisch

Author · added in 1.1.1

Alexander Singer

Author · added in 1.1.0

Sören Vogel

Author · added in 0.4.14

Listed in earlier versions (3)

Carlo Albert & Sören Vogel

no longer listed · 0.1.45 to 0.1

Carlo Albert & Sören Vogel <soeren.vogel@uzh.ch>

no longer listed · 0.2.8 to 0.3.3

Carlo Albert & Sören Vogel <soeren.vogel@posteo.ch>

no longer listed · 0.3.5 to 0.4.12

Package Timeline

21 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.2.6Latest
2025-09-02 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.5
2023-10-20 · diff ↗
1.2.4
2023-10-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.2.3
2022-02-26 · diff ↗
1.2.2
2022-02-01 · diff ↗
1.2.1
2022-01-21 · diff ↗
unarchivedReturned to CRAN
2022-01-21
archivedRemoved from CRAN
2021-12-19
check problems were not corrected in time
1.2
2021-12-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24

Show 24 earlier events

1.1.1
2019-07-05 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.1.0
2019-02-12 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.0.4
2017-10-10 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0.0
2015-06-26 · diff ↗
0.9.3
2015-05-15 · diff ↗
0.9.1
2015-05-06 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.5.2
2015-04-12 · diff ↗
0.4.14
2015-04-03 · diff ↗
0.4.12
2015-04-02 · diff ↗
0.3.5
2014-05-05 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.3.3
2014-03-27 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.2.8
2012-07-12 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
0.1.45
2011-06-22 · diff ↗
0.1
2011-06-17
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-06-17
Total releases: 21 / 15 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 0.5 KB / 1 file
Download size: 2.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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