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GUTS

Fast Calculation of the Likelihood of a Stochastic Survival Model

v1.2.6 · Sep 2, 2025 · GPL (>= 2)

Description

Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood (see Albert, C., Vogel, S. and Ashauer, R. (2016) <doi:10.1371/journal.pcbi.1004978>).

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CRAN Check Status

1 ERROR
2 NOTE
11 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘GUTS-proper.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘GUTS-proper.Rmd’

--- re-building ‘ringTest.Rmd’ using rmarkdown

Quitting from ringTest.Rmd:66-75 [A-SD-read-all-comments]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'xlsx'
---
Backtrace:
    ▆
 1. └─base::library(xlsx)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ringTest.Rmd' failed with diagnostics:
there is no package called 'xlsx'
--- failed re-building ‘ringTest.Rmd’

SUMMARY: processing the following file failed:
  ‘ringTest.Rmd’

Error: Vignette re-building failed.
Execution halted
OK r-devel-linux-x86_64-debian-gcc

*


            
OK r-devel-linux-x86_64-fedora-clang

*


            
OK r-devel-linux-x86_64-fedora-gcc

*


            
OK r-devel-macos-arm64

*


            
OK r-devel-windows-x86_64

*


            
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    extdata   2.5Mb
    libs      2.5Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  5.3Mb
  sub-directories of 1Mb or more:
    extdata   2.5Mb
    libs      2.4Mb
OK r-oldrel-windows-x86_64

*


            
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

*


            
OK r-release-macos-x86_64

*


            
OK r-release-windows-x86_64

*


            

Check History

ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR r-devel-linux-x86_64-debian-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘GUTS-proper.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘GUTS-proper.Rmd’

--- re-building ‘ringTest.Rmd’ using rmarkdown

Quitting from ringTest.Rmd:66-75 [A-SD-read-all-comments]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'xlsx'
---
Backtrace:
    ▆
 1.
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    extdata   2.5Mb
    libs      2.5Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  5.3Mb
  sub-directories of 1Mb or more:
    extdata   2.5Mb
    libs      2.4Mb

Dependency Network

Dependencies Reverse dependencies Rcpp GUTS

Version History

new 1.2.6 Mar 9, 2026