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GSMX

Multivariate Genomic Selection

v1.3 · Oct 15, 2017 · GPL (>= 2)

Description

Estimating trait heritability and handling overfitting. This package includes a collection of functions for (1) estimating genetic variance-covariances and calculate trait heritability; and (2) handling overfitting by calculating the variance components and the heritability through cross validation.

Downloads

CRAN

263

Last 30 days

18590th

616

Last 90 days

2.4K

Last year

Trend: +57.5% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

25

Last 90 days

93

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

2

Last 7 days

6

Last 30 days

1

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

2 NOTE
11 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Zhenyu Jia <ajia.ucr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhenyu",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "ajia.ucr@gmail.com")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Zhenyu Jia <ajia.ucr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhenyu",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "ajia.ucr@gmail.com")
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Zhenyu Jia <ajia.ucr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhenyu",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "ajia.ucr@gmail.com")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Zhenyu Jia <ajia.ucr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhenyu",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "ajia.ucr@gmail.com")
as necessary.

Code

Structure

Lines of code

248

Files

10

Compiled share

0%

Has compiled src

No

Language breakdown

R 138 (55.6%)Docs 110 (44.4%)

API

Exported functions

1

Internal functions

0

Recent export changes

v0.1+1 pattern:^[[:alpha:]]+

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

\dontrun example ratio

0%

Roxygen coverage

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.0.0

System requirements

C++ standard

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

4

First release

2016-10-03

Latest release

2017-10-16

Avg cadence

57 days

Cold removal rate

Dep drift

1

LOC over versions

v0.1: 176 LOCv1.1: 207 LOCv1.2: 248 LOCv1.3: 248 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies MASS GSMX

Version History

5 tracked
new 1.3 Mar 10, 2026
updated 1.3 ← 1.2 diff Oct 15, 2017
updated 1.2 ← 1.1 diff Sep 18, 2017
updated 1.1 ← 0.1 diff Jul 23, 2017
new 0.1 Oct 2, 2016