GRIN2

2.0.0

Genomic Random Interval (GRIN)

0packages depend

2.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Abdelrahman ElsayedFirst published 2024-11-192 releasesCRAN page ↗GitHub ↗

Improved version of 'GRIN' software that streamlines its use in practice to analyze genomic lesion data, accelerate its computing, and expand its analysis capabilities to answer additional scientific questions including a rigorous evaluation of the association of genomic lesions with RNA expression. Pounds, Stan, et al. (2013) DOI:10.1093/bioinformatics/btt372.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("GRIN2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("abdel-elsayed87/GRIN2")

Development version from abdel-elsayed87/GRIN2. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-grin2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GRIN2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.5 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

2.2K

CRAN downloads in the past year

Rank #19,581 · ~6/day · ~183/mo

GRIN2 Releases R versions

Daily download trend is not available in this view yet.

19930 days

59290 days

2.2K1 year

Compare downloads with other packages →

Also on107 r2u31 autocran

Repository

GitHub ↗ abdel-elsayed87/grin2

1Stars

0Forks

0Open issues

0Open PRs

0Releases

61Commits

1Contributors

License GPL-3.0 · 61 commits · Last activity 2025-06-23

Repository practices

Upstream repositoryBeta

Checks run against github.com/abdel-elsayed87/grin2 on 2026-07-19.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.2.0

Imports (16)

circlize data.table dplyr forcats ggplot2graphicsgrDevicesgridmagrittrstatsstringrsurvivaltibble tidyselectutilswritexl

LinkingTo (0)

none

Suggests (8)

knitr rmarkdown biomaRt gridGraphics Gviz ensembldb GenomeInfoDb ComplexHeatmap

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Abdelrahman Elsayed

Author, Maintainer, Copyright holder

Authors (4)

Abdelrahman Elsayed

Author, Maintainer, Copyright holder

Xueyuan Cao

Author

Stanley Pounds

Author, Copyright holder

Lakshmi Anuhya patibandla

Author

Abdelrahman Elsayed

Author, Maintainer, Copyright holder

Stanley Pounds

Author, Copyright holder

Package Timeline

2 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.0.0Latest
2025-06-17 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0
2024-11-19
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-11-19
Total releases: 2 / 2 yrs
License: GPL (>= 3) OSI
Download size: 803 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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