This package was removed from CRAN on 2009-02-03. Its history is shown below.

Details below reflect version 1.1, its last release before removal.

GFMaps

1.1

Visualization technique for interpretation of high-throughput genetic or proteomic experiments.

0packages depend

–downloads / year

–test coverage

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Overview

About

Maintained by Kanika Arora2 releasesCRAN page ↗

GFMaps integrates datasets derived from gene expression profiles with preexisting information from public databases such as KEGG pathway or Gene Ontology using Gene Set Enrichment Analysis (GSEA) and introduce a framework that allow us to visualize biologically annotated datasets and relevant ratings of genes via a color gradient.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/GFMaps/GFMaps_1.1.tar.gz"
pkgFile <- "GFMaps_1.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

None

Vignettes

README

Dependencies · direct

Downloads

GFMaps Releases R versions

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Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (5)

affy topGO plotrix KEGG.db hgu95av2.db

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

ALL

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,611 (94%)Rd 108 (6%)

Code characteristics

Cyclomatic complexity: 131.0 median / 131 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1 0 exported

Complexity

131 avg / 131 max

Call network

1 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (2)

Other (2)

Dr. Sanjay Bhatikar

Contributor

Kanika Arora

Contributor · added in 1.1

Listed in earlier versions (1)

Kanika Arora <kanika.arora@biobase.

no longer listed · 1.0

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 2.9.0 released · 2009-04-17
1.1
2009-02-03 · diff ↗
1.1archived
2009-02-03 · diff ↗
1.0
2009-01-29
R
R 2.8.0 released · 2008-10-20

Package metadata

Total releases: 2
License: GPL (>= 2) OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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