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GFA

Group Factor Analysis

v1.0.5 · Oct 21, 2023 · MIT + file LICENSE

Description

Factor analysis implementation for multiple data sources, i.e., for groups of variables. The whole data analysis pipeline is provided, including functions and recommendations for data normalization and model definition, as well as missing value prediction and model visualization. The model group factor analysis (GFA) is inferred with Gibbs sampling, and it has been presented originally by Virtanen et al. (2012), and extended in Klami et al. (2015) <DOI:10.1109/TNNLS.2014.2376974> and Bunte et al. (2016) <DOI:10.1093/bioinformatics/btw207>; for details, see the citation info.

Downloads

CRAN

252

Last 30 days

18976th

748

Last 90 days

3.9K

Last year

Trend: +10.5% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

23

Last 90 days

83

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

12

Last 7 days

17

Last 30 days

2

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

2,192

Files

27

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,704 (77.7%)Docs 488 (22.3%)

API

Exported functions

9

Internal functions

9

Recent export changes

v1.0.0+9 getDefaultOpts, gfa, informativeNoisePrior +6 more

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

18

Dep constraint coverage

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

5

First release

2016-10-11

Latest release

2023-10-21

Avg cadence

149 days

Cold removal rate

Dep drift

0

LOC over versions

v1.0.0: 2,184 LOCv1.0.1: 2,184 LOCv1.0.3: 2,184 LOCv1.0.4: 2,192 LOCv1.0.5: 2,192 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Version History

6 tracked
new 1.0.5 Mar 10, 2026
updated 1.0.5 ← 1.0.4 diff Oct 20, 2023
updated 1.0.4 ← 1.0.3 diff Oct 6, 2023
updated 1.0.3 ← 1.0.1 diff Aug 3, 2017
updated 1.0.1 ← 1.0.0 diff Mar 16, 2017
new 1.0.0 Oct 10, 2016