FuncDiv

1.0.0

Compute Contributional Diversity Metrics

0packages depend

2.8Kdownloads / year

84.0%test coverage

13/13checks pass

Overview

About

Maintained by Gavin DouglasFirst published 2023-03-081 releasesCRAN page ↗

Compute alpha and beta contributional diversity metrics, which is intended for linking taxonomic and functional microbiome data. See 'GitHub' repository for the tutorial: https://github.com/gavinmdouglas/FuncDiv/wiki. Citation: Gavin M. Douglas, Sunu Kim, Morgan G. I. Langille, B. Jesse Shapiro (2023) doi:10.1093/bioinformatics/btac809.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("FuncDiv", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-funcdiv

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-FuncDiv

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.1 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.83

84.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 120 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.8K

CRAN downloads in the past year

Rank #17,919 · ~8/day · ~236/mo

Releases R versions

Daily download trend is not available in this view yet.

24030 days

63590 days

2.8K1 year

Compare downloads with other packages →

Also on420 r2u41 autocran

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (9)

ape collapse data.tableparallelparallelDist Rcpp RcppParallel RcppXPtrUtilsstats

LinkingTo (3)

Rcpp RcppArmadillo RcppParallel

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Gavin Douglas

Author, Maintainer

Authors (1)

Gavin Douglas

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2023-03-08
Total releases: 1 / 3 yrs
License: AGPL-3 OSI
Minimum R: ≥ 3.5.0
Download size: 171 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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