Fluidigm

0.2

Handling Fluidigm Data

0packages depend

2.7Kdownloads / year

0.1%test coverage

12/13checks pass

Overview

About

Maintained by Daniel FischerFirst published 2024-03-121 releasesCRAN page ↗

Designed to streamline the process of analyzing genotyping data from Fluidigm machines, this package offers a suite of tools for data handling and analysis. It includes functions for converting Fluidigm data to format used by 'PLINK', estimating errors, calculating pairwise similarities, determining pairwise similarity loci, and generating a similarity matrix.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("Fluidigm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-fluidigm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-Fluidigm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.3 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.16

0.1%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 243 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 17%
Documented parameters: 100%
Return-value docs: 100%
References docs: 57%

Downloads

2.7K

CRAN downloads in the past year

Rank #22,287 · ~7/day · ~224/mo

Releases R versions

Daily download trend is not available in this view yet.

13730 days

47990 days

2.7K1 year

Compare downloads with other packages →

Also on98 r2u7 autocran

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (6)

data.tablegraphicsgrDevicesreshape (>= 0.8.8)statsutils

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown testthat digest

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Daniel Fischer

Author, Maintainer

Authors (2)

Daniel Fischer

Author, Maintainer

Robert Ekblom

Author

Contributors (1)

Helena Johansson

Contributor, Funder

Funders (1)

Helena Johansson

Contributor, Funder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.2Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-03-12
Total releases: 1 / 2 yrs
License: GPL-3 OSI
Download size: 607 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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