FinePop2

0.6

Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)

0packages depend

1.7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Reiichiro NakamichiFirst published 2020-02-282 releasesCRAN page ↗

Statistical tool set for population genetics. The package provides following functions: 1) estimators of genetic differentiation (FST), 2) regression analysis of environmental effects on genetic differentiation using generalized least squares (GLS) method, 3) interfaces to read and manipulate 'GENEPOP' format data files). For more information, see Kitada, Nakamichi and Kishino (2020) doi:10.1101/2020.01.30.927186.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("FinePop2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-finepop2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-FinePop2

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-FinePop2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 56 s · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

README

Dependencies · direct

Check history

OK2026-07-04
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-05-12
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-11
11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

1.7K

CRAN downloads in the past year

Rank #24,306 · ~5/day · ~145/mo

Releases R versions

Daily download trend is not available in this view yet.

8930 days

8990 days

1.7K1 year

Compare downloads with other packages →

Also on94 r2u14 autocran

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 484 (52%)Rd 450 (48%)

Code characteristics

Cyclomatic complexity: 5.0 median / 8 max
Documented parameters: 100%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

7 7 exported

Complexity

5.1 avg / 8 max

Call network

7 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Maintainer (1)

Reiichiro Nakamichi

Author, Maintainer

Authors (3)

Reiichiro Nakamichi

Author, Maintainer

Hirohisa Kishino

Author

Shuichi Kitada

Author

Release timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

0.6Latest
2026-07-03 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.4
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2020-02-28
Total releases: 2 / 6 yrs
License: GPL (>= 2.0)
Minimum R: ≥ 3.4.0
Bundled data: 52 KB / 2 files
Download size: 65 KB
Installed size: not tracked yet
With dependencies: not tracked yet