Skip to content

FastJM

Semi-Parametric Joint Modeling of Longitudinal and Survival Data

v1.5.3 · Nov 8, 2025 · GPL (>= 3)

Description

A joint model for large-scale, competing risks time-to-event data with singular or multiple longitudinal biomarkers, implemented with the efficient algorithms developed by Li and colleagues (2022) <doi:10.1155/2022/1362913> and <doi:10.48550/arXiv.2506.12741>. The time-to-event data is modelled using a (cause-specific) Cox proportional hazards regression model with time-fixed covariates. The longitudinal biomarkers are modelled using a linear mixed effects model. The association between the longitudinal submodel and the survival submodel is captured through shared random effects. It allows researchers to analyze large-scale data to model biomarker trajectories, estimate their effects on event outcomes, and dynamically predict future events from patients’ past histories. A function for simulating survival and longitudinal data for multiple biomarkers is also included alongside built-in datasets.

Downloads

301

Last 30 days

10469th

301

Last 90 days

301

Last year

CRAN Check Status

2 NOTE
12 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

*


            
OK r-devel-linux-x86_64-debian-gcc

*


            
OK r-devel-linux-x86_64-fedora-clang

*


            
OK r-devel-linux-x86_64-fedora-gcc

*


            
OK r-devel-macos-arm64

*


            
OK r-devel-windows-x86_64

*


            
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 83.8Mb
  sub-directories of 1Mb or more:
    libs  83.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 85.4Mb
  sub-directories of 1Mb or more:
    libs  84.7Mb
OK r-oldrel-windows-x86_64

*


            
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

*


            
OK r-release-macos-x86_64

*


            
OK r-release-windows-x86_64

*


            

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 83.8Mb
  sub-directories of 1Mb or more:
    libs  83.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 85.4Mb
  sub-directories of 1Mb or more:
    libs  84.7Mb

Reverse Dependencies (2)

imports

Dependency Network

Dependencies Reverse dependencies survival MASS statmod magrittr Rcpp dplyr nlme caret timeROC future future.apply rlang JMbdirect jmBIG FastJM

Version History

new 1.5.3 Mar 9, 2026